BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB012D06SP1|AL426357
(330 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig569 392 e-109
>3x_Contig569
Length = 3008
Score = 392 bits (194), Expect = e-109
Identities = 278/311 (89%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 5 atatgacgatgcnccatcttttgttaatccgggcccattgtgttgtgtctgtgtgtcttt 64
|||||| ||||| ||||||||||||||| ||||||||||||| |||| |||||||||||
Sbjct: 2609 atatgaagatgcaccatcttttgttaataagggcccattgtgt-gtgtatgtgtgtcttt 2551
Query: 65 ytctcctcgattctcggatggattatcgcgtgacamtcgttwamcggctagcyctatttc 124
||||||||||||||||||||||||| |||||| | ||||| | |||||||| ||||||
Sbjct: 2550 ttctcctcgattctcggatggattatagcgtgaaaatcgttaaacggctagctctattta 2491
Query: 125 gcycgtagctagaagagattcattcgccagttgcctttcccgattctgcgccattgccga 184
| ||||||||||||||||||||||||||||||| ||| | |||||||||||||||| ||
Sbjct: 2490 gatcgtagctagaagagattcattcgccagttgcatttacagattctgcgccattgcaga 2431
Query: 185 ctcgcctttgactgacaacgtgtccctcttttgagaatcccggccgtttaacmyctccct 244
||||| ||||||||| ||||||||| |||||||||||| | |||||||||| |||| |
Sbjct: 2430 ctcgcttttgactgataacgtgtccatcttttgagaatacaggccgtttaaaatctccat 2371
Query: 245 ccacmacctttgtcatgccatgcccactcatgtcatgccctacgcctccgtttgggtatc 304
|||| |||||||||||||||||| ||||||||| |||||||| |||||||||||||||||
Sbjct: 2370 ccacaacctttgtcatgccatgcacactcatgtaatgccctaagcctccgtttgggtatc 2311
Query: 305 ctcttctttgt 315
|||||||||||
Sbjct: 2310 ctcttctttgt 2300
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1089
Number of Sequences: 1807
Number of extensions: 1089
Number of successful extensions: 22
Number of sequences better than 1.0e-20: 1
length of query: 330
length of database: 10,358,551
effective HSP length: 15
effective length of query: 315
effective length of database: 10,331,446
effective search space: 3254405490
effective search space used: 3254405490
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.7 bits)
S2: 49 (99.4 bits)